FastQCFastQC Report
Wed 8 May 2024
EGAF00004723294

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004723294
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10372673
Total Bases1 Gbp
Sequences flagged as poor quality0
Sequence length100
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT192920.1859887032011903No Hit
GGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCA143250.13810326422128608No Hit
GTTTTCTCATGCAACACACATAACTGGTTCAGGACCACGGATAGATAGTC119540.11524512534040166No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)