EGAF00004723320 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004723320
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	16703810
Sequences flagged as poor quality	0
Sequence length	100
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCA	91027	0.5449475299347873	No Hit
CTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACG	62972	0.3769918359943031	No Hit
GGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAA	40403	0.24187894857520528	No Hit
CAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAG	38909	0.23293488132348247	No Hit
GTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCC	26332	0.15764068197614797	No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT	26099	0.15624579063099975	No Hit
GTTTTGACCTGCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGC	25813	0.15453360640476635	No Hit
AGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGC	24121	0.14440418084257425	No Hit
GGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTTGAGAGCTTGT	18100	0.10835851221966725	No Hit
GCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCAC	18077	0.10822081908259253	No Hit
CGCTATGTTGCCCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCC	17079	0.10224613426517662	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCTATG	6700	45.904194	1
CTCGCTA	3360	26.312855	1
TGCGCGG	2185	26.2143	7
ACCGCGT	1110	25.377666	6
GTGCGCG	2305	24.645512	6
CGCGGAC	2350	24.57358	9
TCGCTAT	3700	24.276218	2
CCGCGTT	1185	22.979445	7
GCTATGT	13965	22.158194	2
CGCGTTC	1340	20.671558	8
AGACCGC	1495	20.446686	4
GGAGTGC	49875	19.923697	5
TGGAGTC	15460	19.011656	2
ACCGAAG	10225	18.814955	94
CGGACTT	4340	18.641546	94
GTGCAGT	53655	18.594082	8
TGGAGTG	54110	18.459831	4
ATGTTGC	17990	18.455545	5
GAGTGCA	55135	18.239607	6
GGAGTCT	16170	18.176939	3