FastQCFastQC Report
Sat 11 May 2024
EGAF00004723355

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004723355
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15838748
Total Bases1.5 Gbp
Sequences flagged as poor quality0
Sequence length100
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGATCTGGCTGGCTAGG296240.18703498534101307No Hit
CTTGAGTCCAGGAGTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCC188330.11890460028785103No Hit
CTTCGGTCAAGGGTATACGAGTAGCTGCGCTCCCCTGCTAGAACCTCCAA168320.10627102596745652No Hit
CGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCT163850.10344883320323045No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)