FastQCFastQC Report
Sat 11 May 2024
EGAF00004723415

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004723415
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15607577
Total Bases1.5 Gbp
Sequences flagged as poor quality0
Sequence length100
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCT499030.3197357283580917No Hit
CGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCT287770.1843783951858767No Hit
TGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGATCTGGCTGGCTAGG218790.14018191292601023No Hit
CTTGAGTCCAGGAGTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCC163540.10478243996489653No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)