FastQCFastQC Report
Sun 12 May 2024
EGAF00004723433

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004723433
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31880308
Total Bases3.1 Gbp
Sequences flagged as poor quality0
Sequence length100
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGATCTGGCTGGCTAGG1104680.34650857199999446No Hit
CGACCATCCCCGATAGAGGAGGACCGGTCTTCGGTCAAGGGTATACGAGT626780.1966041231471164No Hit
CCTCCCTCACCGCTCCATGTGCGTCCCTCCCGAAGCTGCGCGCTCGGTCG595380.18675478292116876No Hit
CTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGA581230.18231630635438026No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)