EGAF00004723438 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004723438
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	19380406
Sequences flagged as poor quality	0
Sequence length	100
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT	151182	0.7800765370962817	No Hit
GGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCA	74963	0.3867978823560249	No Hit
GGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTTGAGAGCTTGT	70443	0.36347535753378957	No Hit
CTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTTGAGAGCT	55147	0.2845502823831451	No Hit
CTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACG	48723	0.2514034019720743	No Hit
GGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTTGA	47836	0.24682661446824178	No Hit
GGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAA	46494	0.23990209493031261	No Hit
CAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAG	45892	0.2367958648544308	No Hit
GTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCC	31507	0.1625714136226042	No Hit
GTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTTGAGAG	29094	0.15012069406595507	No Hit
CTTGTTTGGAGGTTCTAGCAGGGGAGCGCAGCTACTCGTATACCCTTGAC	24939	0.12868151472162143	No Hit
GGAGGTTCTAGCAGGGGAGCGCAGCTACTCGTATACCCTTGACCGAAGAC	22486	0.11602440113999675	No Hit
GTTTTGACCTGCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGC	21385	0.11034340560254517	No Hit
CTCATTTGGATGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTC	21095	0.10884704892147254	No Hit
AGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGC	20167	0.10405870754204014	No Hit
CGAAGACCGGTCCTCCTCTATCGGGGATGGTCGTCCTCTTCGACCGAGCG	19712	0.10171097550794343	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
ACCGCGT	1190	45.39342	6
GACCGCG	1205	44.43866	5
CGCTATG	6425	41.31589	1
CCGCGTT	1390	38.524067	7
TGGAGTC	38655	38.29874	2
GGAGTCT	41495	35.52215	3
GAGTCTT	45620	32.39258	4
CGCGTTC	1740	31.044846	8
AGTCTTG	48475	30.717415	5
GTCTTGG	50685	29.47992	6
AGACCGC	1945	29.221857	4
CTCGCTA	3560	29.166483	1
TGCGCGG	3560	28.500063	7
CGCGGAC	3680	27.443142	9
GTGCGCG	3760	27.233955	6
TCGCTAT	3780	27.096079	2
TCTTGGA	57340	26.263216	7
CTGGAGT	78105	25.144283	1
CTTGGAA	60810	24.339651	8
TTGGAAG	63700	23.191263	9