EGAF00004723448 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004723448
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	34186382
Sequences flagged as poor quality	0
Sequence length	100
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT	77542	0.22682131148010926	No Hit
CCCCGAGCCACCTTCCCCGCCGGGCCTTCCCAGCCGTCCCGGAGCCGGTC	75502	0.22085402310194746	No Hit
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACC	61096	0.17871443664322245	No Hit
GGCGTACGGAAGACCCGCTCCCCGGCGCCGCTCGTGGGGGGCCCAAGTCC	50389	0.1473949480819585	No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT	48089	0.14066712294971723	No Hit
CCCGTCCCGGGGGTTGGCCGCGCGGGCCCCGGTGGGGCGGCCACCCGGGG	45315	0.13255278081196192	No Hit
CCCGGGGGTTGGCCGCGCGGGCCCCGGTGGGGCGGCCACCCGGGGTCCCG	42082	0.12309579878912018	No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA	40264	0.11777789179328775	No Hit
CCGGGGGTTGGCCGCGCGGGCCCCGGTGGGGCGGCCACCCGGGGTCCCGG	38342	0.11215577009582353	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TCGGAAG	19180	56.573265	94
CGTACGG	8915	53.46185	3
GCGTACG	8975	52.99944	2
GGCGTAC	9805	49.09093	1
ATCGGAA	26740	42.107677	94
GTACGGA	11900	40.169956	4
TACGGAA	12460	38.280777	5
ACCGCGT	9265	33.273228	6
AGACCGC	9240	33.166756	4
GATCGGA	38780	32.90015	94
CCGCGTT	9955	30.872585	7
CGCGTTC	11165	27.529203	8
GGTCGCC	19480	26.319967	90-91
AGATCGG	55540	25.7727	94
ACGGAAG	18945	25.499699	6
GCGTTCT	12075	25.494656	9
CAGACCG	12385	25.048128	3
AAATGCG	22935	24.885576	70-71
CGGAAGA	19915	24.092506	7
GACCGCG	13030	23.803028	5