FastQCFastQC Report
Fri 10 May 2024
EGAF00004723464

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004723464
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5274842
Total Bases527.4 Mbp
Sequences flagged as poor quality0
Sequence length100
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT392910.744875391528315No Hit
GTTTTCTCATGCAACACACATAACTGGTTCAGGACCACGGATAGATAGTC239410.4538714145371558No Hit
GGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTTGAGAGCTTGT164650.3121420508898655No Hit
CTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTTGAGAGCT134700.2553630990274211No Hit
GGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTTGA99800.1891999798287797No Hit
AGATAGTCTTCTGCACAGGGCATTCTTTTTGCTTCAGGATGTTTACAACA87250.16540779799660352No Hit
GTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTTGAGAG83280.1578815062138354No Hit
CTTTTCCTAGGTTTCTTGAGACCTCTACAAGAGTTGGAGTTGACACTTGG74450.14114166831916483No Hit
GATAGTCTTCTGCACAGGGCATTCTTTTTGCTTCAGGATGTTTACAACAT62430.11835425591894506No Hit
GGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCA61120.1158707692097697No Hit
ATAGTCTTCTGCACAGGGCATTCTTTTTGCTTCAGGATGTTTACAACATT57310.10864780404796959No Hit
CTTCTGCACAGGGCATTCTTTTTGCTTCAGGATGTTTACAACATTTGCTG54520.10335854609484038No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)