FastQCFastQC Report
Tue 13 Sep 2022
EGAF00004723465

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004723465
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5274842
Sequences flagged as poor quality0
Sequence length100
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCAGAATGCGCTATTAGTTCGTTACACCAAGAAAGTACCCCAAGTGTCAA89830.17029893975971225No Hit
AGCTTTTTGAGCAGCTTGGAGAGTACAAATTCCAGAATGCGCTATTAGTT88470.16772066348148437No Hit
GCTTTTTGAGCAGCTTGGAGAGTACAAATTCCAGAATGCGCTATTAGTTC84310.1598341713363168No Hit
CCCGAAGCTGCGCGCTCGGTCGAAGAGGACGACCATCCCCGATAGAGGAG80740.15306619610596867No Hit
TGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGATCTGGCTGGCTAGG78870.14952106622340536No Hit
CAAAATTGTGAGCTTTTTGAGCAGCTTGGAGAGTACAAATTCCAGAATGC77830.14754944318711347No Hit
CTCATGAATGCTATGCCAAAGTGTTCGATGAATTTAAACCTCTTGTGGAA72790.137994654626622No Hit
ATTTAATCAAACAAAATTGTGAGCTTTTTGAGCAGCTTGGAGAGTACAAA61400.11640159079646367No Hit
CTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGA59430.11266688177579537No Hit
CGACCATCCCCGATAGAGGAGGACCGGTCTTCGGTCAAGGGTATACGAGT53780.10195566047286346No Hit
GTTGATTCGGCTGATCTGGCTGGCTAGGCGGGTGTCCCCTTCCTCCCTCA53290.101026722696149No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)