FastQCFastQC Report
Sat 11 May 2024
EGAF00004723475

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004723475
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18501385
Total Bases1.8 Gbp
Sequences flagged as poor quality0
Sequence length100
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGATCTGGCTGGCTAGG359390.19425032234073286No Hit
CTTCGGTCAAGGGTATACGAGTAGCTGCGCTCCCCTGCTAGAACCTCCAA198240.10714873508118447No Hit
CGACCATCCCCGATAGAGGAGGACCGGTCTTCGGTCAAGGGTATACGAGT185510.1002681691127448No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)