EGAF00004723478 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004723478
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	15467801
Sequences flagged as poor quality	0
Sequence length	100
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT	111073	0.7180917313327214	No Hit
GGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTTGAGAGCTTGT	70138	0.453445192370913	No Hit
GGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCA	47362	0.3061973709126462	No Hit
CTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTTGAGAGCT	43126	0.27881144837588745	No Hit
GGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTTGA	38468	0.24869727765439964	No Hit
GTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTTGAGAG	27280	0.17636637554362122	No Hit
CTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACG	25927	0.1676191722404497	No Hit
GGAGGTTCTAGCAGGGGAGCGCAGCTACTCGTATACCCTTGACCGAAGAC	25245	0.16321001285185915	No Hit
CTTGTTTGGAGGTTCTAGCAGGGGAGCGCAGCTACTCGTATACCCTTGAC	19360	0.12516323425676346	No Hit
GGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAA	19017	0.12294572447628464	No Hit
CAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAG	18435	0.11918306939687161	No Hit
AGCTTGACTACCCTACGTTCTCCTACAAATGGACCTTGAGAGCTTGTTTG	16879	0.10912346234606975	No Hit
GTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCC	15689	0.10143006106685752	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCTATG	3190	44.245506	1
GACCGCG	915	40.106514	5
ACCGCGT	940	38.9688	6
TGGAGTC	31040	36.998905	2
CCGCGTT	1030	35.563873	7
GGAGTCT	34215	33.85423	3
GAGTCTT	37435	31.042574	4
TGCGCGG	3725	29.501307	7
AGTCTTG	40500	29.169779	5
CGCGGAC	3710	28.861456	9
GTCTTGG	41495	28.16952	6
CGCGTTC	1340	28.037434	8
GTGCGCG	3990	27.306458	6
AGACCGC	1445	26.698362	4
CTGGAGT	54600	25.81593	1
TCTTGGA	47760	24.69074	7
CTTGGAA	50430	23.076262	8
TTGGAAG	51620	22.389837	9
GGTGCGC	5060	21.571426	5
TCGCGCG	2030	21.515142	9