FastQCFastQC Report
Sat 11 May 2024
EGAF00004723487

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004723487
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18450930
Total Bases1.8 Gbp
Sequences flagged as poor quality0
Sequence length100
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGATCTGGCTGGCTAGG347670.18842952631655965No Hit
CTTCGGTCAAGGGTATACGAGTAGCTGCGCTCCCCTGCTAGAACCTCCAA198100.10736586177498914No Hit
CGACCATCCCCGATAGAGGAGGACCGGTCTTCGGTCAAGGGTATACGAGT186210.10092174215608643No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)