FastQCFastQC Report
Fri 10 May 2024
EGAF00004723566

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004723566
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29777842
Total Bases2.9 Gbp
Sequences flagged as poor quality0
Sequence length100
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT1428260.47963851779454No Hit
GGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCA353260.11863183369701538No Hit
CTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTTGAGAGCT299240.1004908280459007No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)