EGAF00004723598 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004723598
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	36385067
Sequences flagged as poor quality	0
Sequence length	100
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA	80485	0.2212033854438141	No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT	77856	0.21397789373316256	No Hit
CTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATC	67695	0.18605160188381678	No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT	65127	0.17899376136919026	No Hit
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACC	63947	0.17575067265919836	No Hit
GGCGTACGGAAGACCCGCTCCCCGGCGCCGCTCGTGGGGGGCCCAAGTCC	61791	0.16982516481280632	No Hit
CCCCGAGCCACCTTCCCCGCCGGGCCTTCCCAGCCGTCCCGGAGCCGGTC	58114	0.15971937058683994	No Hit
GCTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGAT	55504	0.1525460981011798	No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA	47956	0.13180132387828225	No Hit
CCCGTCCCGGGGGTTGGCCGCGCGGGCCCCGGTGGGGCGGCCACCCGGGG	40282	0.11071025374228388	No Hit
GGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCA	36560	0.10048078240449579	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCGTACG	10770	56.818165	2
CGTACGG	10995	55.788616	3
TCGGAAG	16090	51.753902	94
GGCGTAC	12205	51.075066	1
ACCGCGT	17395	45.169956	6
CCGCGTT	17695	44.351032	7
AGACCGC	18265	43.001846	4
GTACGGA	14615	42.03462	4
ATCGGAA	20970	40.98743	94
TACGGAA	15360	39.895798	5
GCGTTCT	21440	36.674526	9
CAGACCG	21640	36.577595	3
CGCGTTC	21620	36.346294	8
GCCGGCT	21905	34.990177	94
GACCGCG	22735	34.560665	5
GATCGGA	30395	32.37501	94
ACGGAAG	20800	29.709835	6
CGGAAGA	22180	27.818968	7
AATACGG	18755	27.276606	32-33
TACGGAG	19740	26.01156	34-35