FastQCFastQC Report
Thu 9 May 2024
EGAF00004723643

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004723643
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27517036
Total Bases2.7 Gbp
Sequences flagged as poor quality0
Sequence length100
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGATCTGGCTGGCTAGG603990.21949675103088867No Hit
CGACCATCCCCGATAGAGGAGGACCGGTCTTCGGTCAAGGGTATACGAGT573630.20846358597633843No Hit
CCTCCCTCACCGCTCCATGTGCGTCCCTCCCGAAGCTGCGCGCTCGGTCG459080.16683482915819858No Hit
GTTGATTCGGCTGATCTGGCTGGCTAGGCGGGTGTCCCCTTCCTCCCTCA290480.10556369515960949No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)