EGAF00004723660 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004723660
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	11579168
Sequences flagged as poor quality	0
Sequence length	100
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT	69147	0.5971672576129822	No Hit
GGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCA	27583	0.23821227915511717	No Hit
GTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCC	25164	0.21732131358660656	No Hit
GGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTTGA	18915	0.16335370555121057	No Hit
CTCATTTGGATGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTC	13955	0.12051815812673243	No Hit
GTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTTGAGAG	13346	0.11525871288852532	No Hit
CAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAG	13297	0.11483553913372706	No Hit
CTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTTGAGAGCT	11677	0.10084489662815152	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TCGCGCG	785	37.185905	9
ACCGCGT	845	35.02961	6
CCGCGTT	840	34.751114	7
TGGAGTC	21535	31.700945	2
TATACCC	21625	31.0701	94
CACCCGA	7785	30.056156	94
CGCGTTC	1010	29.368076	8
GGAGTCT	23405	29.328842	3
GAGTCTT	23540	29.04089	4
AGTCTTG	25890	27.203032	5
CTCGCGC	1105	26.843222	8
GACCGCG	1145	26.671999	5
GTCTTGG	27115	25.697035	6
TGCGCGG	995	24.605751	9
CCTCGCG	1190	24.5302	7
CTCGCTA	1795	23.55772	1
CGCTATG	2420	23.298134	1
TCTTGGA	30425	23.274137	7
CTTGGAA	31305	22.033337	8
CTGGAGT	35760	21.836786	1