FastQCFastQC Report
Sat 11 May 2024
EGAF00004723715

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004723715
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14519133
Total Bases1.4 Gbp
Sequences flagged as poor quality0
Sequence length100
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGATCTGGCTGGCTAGG243770.16789570010826405No Hit
CGACCATCCCCGATAGAGGAGGACCGGTCTTCGGTCAAGGGTATACGAGT169800.11694913187998209No Hit
CGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCT167660.11547521467018726No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)