FastQCFastQC Report
Sat 11 May 2024
EGAF00004723726

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004723726
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21580178
Total Bases2.1 Gbp
Sequences flagged as poor quality0
Sequence length100
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT495920.22980347984154717No Hit
GGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCA482530.2235987117437122No Hit
CTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACG318580.14762621513131172No Hit
GGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTTGAGAGCTTGT265870.12320102271630938No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)