FastQCFastQC Report
Sat 11 May 2024
EGAF00004723750

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004723750
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17387653
Total Bases1.7 Gbp
Sequences flagged as poor quality0
Sequence length100
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT401950.23116978467421684No Hit
GGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTTGAGAGCTTGT264500.15211943785627652No Hit
GGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCA226260.1301268204512708No Hit
CTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTTGAGAGCT181570.10442467422141447No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)