FastQCFastQC Report
Sat 11 May 2024
EGAF00004723773

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004723773
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16122948
Total Bases1.6 Gbp
Sequences flagged as poor quality0
Sequence length100
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGATCTGGCTGGCTAGG228760.14188472232249338No Hit
CTTGAGTCCAGGAGTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCC219220.13596769027599667No Hit
CGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCT178480.11069935845479376No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)