FastQCFastQC Report
Tue 13 Sep 2022
EGAF00004723840

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004723840
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5221793
Sequences flagged as poor quality0
Sequence length100
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT388630.7442462770929449No Hit
GTTTTCTCATGCAACACACATAACTGGTTCAGGACCACGGATAGATAGTC236790.4534649305324818No Hit
GGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTTGAGAGCTTGT160400.3071741832738295No Hit
CTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTTGAGAGCT130520.24995245885848025No Hit
GGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTTGA97770.18723453802171017No Hit
AGATAGTCTTCTGCACAGGGCATTCTTTTTGCTTCAGGATGTTTACAACA87900.1683329844748729No Hit
GTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTTGAGAG84060.16097918856607302No Hit
CTTTTCCTAGGTTTCTTGAGACCTCTACAAGAGTTGGAGTTGACACTTGG74890.1434181707317774No Hit
GGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCA61070.11695216566416937No Hit
GATAGTCTTCTGCACAGGGCATTCTTTTTGCTTCAGGATGTTTACAACAT59410.11377318097442773No Hit
ATAGTCTTCTGCACAGGGCATTCTTTTTGCTTCAGGATGTTTACAACATT58600.11222198964991527No Hit
CTTCTGCACAGGGCATTCTTTTTGCTTCAGGATGTTTACAACATTTGCTG53690.10281908915194456No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)