FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004723936

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004723936
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42288454
Sequences flagged as poor quality0
Sequence length100
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT908270.2147796653904633No Hit
GGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTTGAGAGCTTGT584620.13824577271138833No Hit
GGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCA530980.125561459399769No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)