FastQCFastQC Report
Mon 12 Sep 2022
EGAF00004724407

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004724407
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17239207
Sequences flagged as poor quality0
Sequence length28
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGCCGCAGGCTCCACTCCTGGTGGTGC1258450.7299929747348588No Hit
TGCCCTCCAATGGATCCTCGTTAAAGGA826700.4795464199716379No Hit
AGGCCACCGTCCTGCTGTCTATATCAAC625180.36265009173565815No Hit
GCTGCGGATATGGGTACGGCCCGGCGCG576960.33467896754183646No Hit
ACCTTTAAGTTTCAGCTTTGCAACCATA525100.3045963773159635No Hit
AGGTCCGTCTTGCGCCGGTCCAAGAATT492930.2859354261480821No Hit
CCCTCCTAATCATGGCCTCAGTTCCGAA461570.2677443341796406No Hit
ACGGGCTTTTTAACTGCAGCAACTTTAA460750.26726867424934336No Hit
GTCTCGTTCGTTATCGGAATTAACCAGA456860.26501218994586007No Hit
TTTCCTCTAAGTTTCAGCTTTGCAACCA444320.25773807345082633No Hit
CCTAGCTGCGGTATCCAGGCGGCTCGGG443740.2574016310611039No Hit
CTGGTCTGTCTTGCGCCGGTCCAAGAAT411430.2386594696612205No Hit
TGCCCTACAATGGATCCTCGTTAAAGGA405250.2350746179914192No Hit
TTCGGTCTTGATTAATGAAAACATTCTT394320.22873441916440818No Hit
GCAGCAACTTTAATATACGCTATTGGAG340860.19772371200136987No Hit
CATTCGCTTTACCGGATAAAACTGCGTG329060.19087884958977522No Hit
GTCTTCGAACCTCCGACTTTCGTTCTTG286650.16627795002403534No Hit
CGTTCTGATTAATGAAAACATTCTTGGC269600.15638770391236673No Hit
CCACCTACTAAGAACGGCCATGCACCAC266680.1546938905020399No Hit
CTTCTCTTCAAAGTTCTTTTCAACTTTC263810.1530290807459995No Hit
ACGGCCATGCACCACCACCCACGGAATC259240.1503781467442209No Hit
CGTCACTACCTCCCCGGGTCGGGAGTGG253360.14696731700013813No Hit
GAGTCCGTCTTGCGCCGGTCCAAGAATT250100.14507627874066367No Hit
AGGCCGTCCCTCTTAATCATGGCCTCAG248020.14386972672234866No Hit
AGCTCCTTTAAGTTTCAGCTTTGCAACC240620.13957718588795878No Hit
CGTTCGTTATCGGAATTAACCAGACAAA237710.13788917320848923No Hit
ACGGCCACCGTCCTGCTGTCTATATCAA233130.1352324384758533No Hit
CACCTTGTTACGACTTTTACTTCCTCTA230560.13374165064553142No Hit
TACGGGCGGTGTGTACAAAGGGCAGGGA225400.1307484735231731No Hit
TGTTCCGAAAACCAACAAAATAGAACCG224970.1304990420963099No Hit
TTGGCAAATGCTTTCGCTCTGGTCCGTC222680.12917067472999194No Hit
GCAGCCATACTCCCCCCGGAACCCAAAG221980.12876462356998208No Hit
TTAGTTCTTGATTAATGAAAACATTCTT219300.12721002770023007No Hit
ACACCCTCTCCCCCGGATTTTCAAGGGC181300.10516725044255226No Hit
GTGCGGTGTGTACAAAGGGCAGGGACTT178290.10342123045450988No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)