FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004724415

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004724415
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences68877799
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCCCTCCAATGGATCCTCGTTAAAGGA2983190.4331134332559029No Hit
TGTTCCGTTGGTCAAGTTATTGGATCAA2697760.3916733750449836No Hit
AGGGTGATAGATTGGTCCAATTGGGTGT1660700.24110816897618928No Hit
TGACTTTTACTTCCTCTAGATAGTCAAG1646340.23902331722301406No Hit
AGTGAGGGTAATAATGACTTGTTGGTTG1588960.23069262129006185No Hit
GTCTCGTTCGTTATCGGAATTAACCAGA1486460.2158111933861301No Hit
TACGGGCGGTGTGTACAAAGGGCAGGGA1441110.20922706894278081No Hit
AGTGAGGAGTTCAGTTATATGTTTGGGA1342330.19488572798326498No Hit
CCTCTATATAAATGCGTAGGGGTTTTAG1222690.17751583496447093No Hit
ACGAGCTTTTTAACTGCAGCAACTTTAA1143640.16603898739563383No Hit
GCTGCGGATATGGGTACGGCCCGGCGCG1142290.16584298810128936No Hit
CATGCCTGTGTTGGGTTGACAGTGAGGG850260.12344471111801932No Hit
ACGGGCTGTTAATTGTCAGTTCAGTGTT809550.11753424350856506No Hit
AGTTGGTTGATTGTAGATATTGGGCTGT805970.11701448241689605No Hit
GGTGAAGTCTTAGCATGTACTGCTCGGA772570.11216531469015147No Hit
CGTTCGTTATCGGAATTAACCAGACAAA765080.11107788156819588No Hit
GGATTACTCCGGTCTGAACTCAGATCAC750800.10900464458801885No Hit
CACCTTGTTACGACTTTTACTTCCTCTA749280.10878396390105322No Hit
AGTGGGTGTTGAGCTTGAACGCTTTCTT740030.10744100577313744No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)