FastQCFastQC Report
Thu 12 May 2022
EGAF00004724417

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004724417
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences138806486
Sequences flagged as poor quality0
Sequence length28
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGGGCTGTTAATTGTCAGTTCAGTGTT9700920.698880886589118No Hit
CCTCTATATAAATGCGTAGGGGTTTTAG6866970.49471535501590325No Hit
ACGGGCTTTTTAACTGCAGCAACTTTAA6305130.4542388602791947No Hit
TGTTCCGTTGGTCAAGTTATTGGATCAA6226240.44855540828257834No Hit
GCCTCTATATAAATGCGTAGGGGTTTTA5280090.3803921669769812No Hit
ACGCCGAGTTCCTTTTACTTTTTTTAAC4299390.30973984890014433No Hit
TGCTACCTTTGCACGGTTAGGGTACCGC3815810.27490141923195144No Hit
CAGCCGAGTTCCTTTTACTTTTTTTAAC3084250.22219783015038647No Hit
AGTTGGTTGATTGTAGATATTGGGCTGT3081120.22197233636474306No Hit
CCACCTACTAAGAACGGCCATGCACCAC2973240.214200365248062No Hit
CAGTCCTTTGAAGTATACTTGAGGAGGG2625890.18917631846108401No Hit
CGTTGGGTTGACAGTGAGGGTAATAATG2093360.15081139652220574No Hit
GCTGCTTTTAGGCCTACTATGGGTGTTA1951260.14057412273948064No Hit
GAGGTGATGTTTTTGGTAAACAGGCGGG1864280.13430784495185621No Hit
GCAGCAACTTTAATATACGCTATTGGAG1776120.12795655672747164No Hit
CTGCGGAGGAGAATGTTTTCATGTTACT1741490.12546171653679064No Hit
CATGCCTGTGTTGGGTTGACAGTGAGGG1671110.12039134828324954No Hit
AGGGTGATAGATTGGTCCAATTGGGTGT1602500.11544849568484862No Hit
GCACTCTACTCTCAGTTTACTGCTAAAT1594640.11488223972473446No Hit
TACGGGCTGTTAATTGTCAGTTCAGTGT1552170.11182258442879968No Hit
ACGGGCTAAGCATAGTGGGGTATCTAAT1536070.11066269626622491No Hit
GCGGGTTTTAGTTAAATGTCCTTTGAAG1534460.11054670744996745No Hit
GCCTCTAGATAGTCAAGTTCGACCGTCT1517770.1093443140690126No Hit
GCTGGGTGTTGAGCTTGAACGCTTTCTT1443520.10399514039999543No Hit
CCACCAACTAAGAACGGCCATGCACCAC1420040.1023035767939547No Hit
TACGGGCGGTGTGTACAAAGGGCAGGGA1393950.10042398162863944No Hit
CAGTCCTTTCGTACAGGGAGGAATTTGA1393920.10042182034634894No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)