FastQCFastQC Report
Thu 12 May 2022
EGAF00004724419

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004724419
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences139586948
Sequences flagged as poor quality0
Sequence length28
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGGGCTGTTAATTGTCAGTTCAGTGTT9728880.6969763390772037No Hit
CCTCTATATAAATGCGTAGGGGTTTTAG6957750.49845276364950686No Hit
ACGGGCTTTTTAACTGCAGCAACTTTAA6360200.4556443199832695No Hit
TGTTCCGTTGGTCAAGTTATTGGATCAA6260080.44847172960612336No Hit
GCCTCTATATAAATGCGTAGGGGTTTTA5313100.38063014315636445No Hit
ACGCCGAGTTCCTTTTACTTTTTTTAAC4331590.3103148297217588No Hit
TGCTACCTTTGCACGGTTAGGGTACCGC3831500.27448841420331077No Hit
CAGCCGAGTTCCTTTTACTTTTTTTAAC3105800.22249931275809542No Hit
AGTTGGTTGATTGTAGATATTGGGCTGT3094360.2216797518919892No Hit
CCACCTACTAAGAACGGCCATGCACCAC2986570.2139576832068855No Hit
CAGTCCTTTGAAGTATACTTGAGGAGGG2642210.18928775489811556No Hit
CGTTGGGTTGACAGTGAGGGTAATAATG2101220.15053126600346617No Hit
GCTGCTTTTAGGCCTACTATGGGTGTTA1975030.1414910224987511No Hit
GAGGTGATGTTTTTGGTAAACAGGCGGG1875270.13434422249851038No Hit
GCAGCAACTTTAATATACGCTATTGGAG1791010.12830784150392055No Hit
CTGCGGAGGAGAATGTTTTCATGTTACT1748410.12525598023677686No Hit
CATGCCTGTGTTGGGTTGACAGTGAGGG1678260.12023043873700856No Hit
AGGGTGATAGATTGGTCCAATTGGGTGT1615250.11571640637919815No Hit
GCACTCTACTCTCAGTTTACTGCTAAAT1601650.11474210325165932No Hit
GCGGGTTTTAGTTAAATGTCCTTTGAAG1557480.11157776728523358No Hit
TACGGGCTGTTAATTGTCAGTTCAGTGT1548180.11091151588184306No Hit
ACGGGCTAAGCATAGTGGGGTATCTAAT1540910.11039069354822487No Hit
GCCTCTAGATAGTCAAGTTCGACCGTCT1525160.1092623645586119No Hit
GCTGGGTGTTGAGCTTGAACGCTTTCTT1452180.1040340820403925No Hit
CCACCAACTAAGAACGGCCATGCACCAC1429620.10241788508765161No Hit
CAGTCCTTTCGTACAGGGAGGAATTTGA1402580.1004807412223097No Hit
TACGGGCGGTGTGTACAAAGGGCAGGGA1400320.1003188349672922No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)