FastQCFastQC Report
Wed 11 May 2022
EGAF00004724421

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004724421
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences123284029
Sequences flagged as poor quality0
Sequence length28
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCTATATAAATGCGTAGGGGTTTTAG4388730.3559852833816779No Hit
ACGGGCTGTTAATTGTCAGTTCAGTGTT3949710.32037483135792066No Hit
ATGAGGGTAATAATGACTTGTTGGTTGA2799920.22711133167135542No Hit
CGTTGGGTTGACAGTGAGGGTAATAATG2719750.22060846178218269No Hit
CAGTCCTTTGAAGTATACTTGAGGAGGG2371520.19236230509630733No Hit
CGTTCGTTATCGGAATTAACCAGACAAA2285700.1854011438902601No Hit
CAGCCGAGTTCCTTTTACTTTTTTTAAC2269870.18411711706793749No Hit
TGTTCCGTTGGTCAAGTTATTGGATCAA2188730.17753556707657567No Hit
ACGCCGAGTTCCTTTTACTTTTTTTAAC2034860.16505463169118198No Hit
TGCTGCTTTTAGGCCTACTATGGGTGTT1902570.15432412579572655No Hit
GGTGAAGTCTTAGCATGTACTGCTCGGA1874760.15206835915461525No Hit
GCCTCTATATAAATGCGTAGGGGTTTTA1870770.1517447162600437No Hit
TAGTTGGTTGATTGTAGATATTGGGCTG1750570.14199487266919222No Hit
ACCTTTAAGTTTCAGCTTTGCAACCATA1691370.13719295303043672No Hit
TACGGGCTGTTAATTGTCAGTTCAGTGT1641810.13317296760312725No Hit
GTCTCGTTCGTTATCGGAATTAACCAGA1568010.12718679075616518No Hit
GTAGGCCTTATTTCTCTTGTCCTTTCGT1524060.12362185210543371No Hit
TGCTACCTTTGCACGGTTAGGGTACCGC1517970.12312787084529822No Hit
TGCGTGGGTACTTGCGCTTACTTTGTAG1483360.1203205323537893No Hit
TTCGGTCTTGATTAATGAAAACATTCTT1476620.11977382731383641No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC1460820.11849223389673613No Hit
TTCTCCTCTATATAAATGCGTAGGGGTT1423380.11545534417925295No Hit
AGGTCCGTCTTGCGCCGGTCCAAGAATT1397450.11335207093207507No Hit
GCTGCTTTTAGGCCTACTATGGGTGTTA1329720.10785825307510026No Hit

[OK]Adapter Content

Adapter graph