FastQCFastQC Report
Thu 9 May 2024
EGAF00004724423

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004724423
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences122674169
Total Bases3.4 Gbp
Sequences flagged as poor quality0
Sequence length28
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCTATATAAATGCGTAGGGGTTTTAG4352040.35476417207276945No Hit
ACGGGCTGTTAATTGTCAGTTCAGTGTT3953440.3222715941120416No Hit
ATGAGGGTAATAATGACTTGTTGGTTGA2782110.22678857518896256No Hit
CGTTGGGTTGACAGTGAGGGTAATAATG2694730.21966564126470667No Hit
CAGTCCTTTGAAGTATACTTGAGGAGGG2341020.19083235037035384No Hit
CAGCCGAGTTCCTTTTACTTTTTTTAAC2275120.1854603963121201No Hit
CGTTCGTTATCGGAATTAACCAGACAAA2271390.18515633882141888No Hit
TGTTCCGTTGGTCAAGTTATTGGATCAA2190310.17854696044446No Hit
ACGCCGAGTTCCTTTTACTTTTTTTAAC2028480.16535510421921015No Hit
TGCTGCTTTTAGGCCTACTATGGGTGTT1883630.15354740246905607No Hit
GGTGAAGTCTTAGCATGTACTGCTCGGA1859010.15154045999692078No Hit
GCCTCTATATAAATGCGTAGGGGTTTTA1858780.15152171114360677No Hit
TAGTTGGTTGATTGTAGATATTGGGCTG1747000.14240976843299424No Hit
ACCTTTAAGTTTCAGCTTTGCAACCATA1681780.13709324576716717No Hit
TACGGGCTGTTAATTGTCAGTTCAGTGT1636470.13339972166430572No Hit
GTCTCGTTCGTTATCGGAATTAACCAGA1549240.1262890152530807No Hit
TGCTACCTTTGCACGGTTAGGGTACCGC1509680.12306421248306969No Hit
GTAGGCCTTATTTCTCTTGTCCTTTCGT1505780.12274629714426677No Hit
TGCGTGGGTACTTGCGCTTACTTTGTAG1484880.12104259699529736No Hit
TTCGGTCTTGATTAATGAAAACATTCTT1465420.1194562809714244No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC1453270.11846585241592303No Hit
TTCTCCTCTATATAAATGCGTAGGGGTT1406450.11464923801521737No Hit
AGGTCCGTCTTGCGCCGGTCCAAGAATT1398870.11403134102339017No Hit
GCTGCTTTTAGGCCTACTATGGGTGTTA1313030.10703394289958466No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)