FastQCFastQC Report
Thu 29 Sep 2022
EGAF00004724426

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004724426
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences87701965
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCCCCAAAGGACTCAAAGAACCTCTGGGTCCAAGGGTAGACCACCAGC2673710.3048631806596352No Hit
GGACAGATCCCCAAAGGACTCAAAGAACCTCTGGGTCCAAGGGTAGACCA1740920.1985041042124883No Hit
GCCAGGCCATCACTAAAGGCACCGAGCACTTTCTTGCCATGAGCCTTCAC1635730.18651007420415266No Hit
GCCCATAACAGCATCAGGAGTGGACAGATCCCCAAAGGACTCAAAGAACC1579150.18005867941499373No Hit
CAAAGAACCTCTGGGTCCAAGGGTAGACCACCAGCAGCCTGCCCAGGGCC1376550.15695771468746453No Hit
GGAGTGGACAGATCCCCAAAGGACTCAAAGAACCTCTGGGTCCAAGGGTA1354780.15447544419329715No Hit
GCCATGAGCCTTCACCTTAGGGTTGCCCATAACAGCATCAGGAGTGGACA1177690.13428319422489565No Hit
GCCTTCACCTTAGGGTTGCCCATAACAGCATCAGGAGTGGACAGATCCCC1095460.12490712152230568No Hit
CTTTCTTGCCATGAGCCTTCACCTTAGGGTTGCCCATAACAGCATCAGGA1066680.12162555308766457No Hit
GGTTTCGGGGGTCTTAGCTTTGGCTCTCCTTGCAAAGTTATTTCTAGTTA1055280.12032569623725078No Hit
GTTGCCCATAACAGCATCAGGAGTGGACAGATCCCCAAAGGACTCAAAGA1035680.11809085463478498No Hit
CCTTAGGGTTGCCCATAACAGCATCAGGAGTGGACAGATCCCCAAAGGAC1032920.11777615244994795No Hit
GACAGATCCCCAAAGGACTCAAAGAACCTCTGGGTCCAAGGGTAGACCAC988440.11270443028271943No Hit
CCCATAACAGCATCAGGAGTGGACAGATCCCCAAAGGACTCAAAGAACCT936220.1067501737275784No Hit
CAGGAGTGGACAGATCCCCAAAGGACTCAAAGAACCTCTGGGTCCAAGGG928610.10588246226866183No Hit
GCATCAGGAGTGGACAGATCCCCAAAGGACTCAAAGAACCTCTGGGTCCA917160.10457690429171115No Hit
GGGTTGCCCATAACAGCATCAGGAGTGGACAGATCCCCAAAGGACTCAAA903090.10297260728422675No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)