FastQCFastQC Report
Thu 29 Sep 2022
EGAF00004724427

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004724427
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences230097049
Sequences flagged as poor quality0
Sequence length76
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGG7858080.34151155063270716No Hit
CCTCTATATAAATGCGTAGGGGTTTTAGTTAAATGTCCTTTGAAGTATAC5497900.23893830989549109No Hit
TGACTTTTACTTCCTCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCTC3918480.17029683853094527No Hit
CGACTTTTACTTCCTCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCTC3685100.16015416173373No Hit
ACGGGCTGTTAATTGTCAGTTCAGTGTTTTAATCTGACGCAGGCTTATGC3090970.1343333177645403No Hit
GCCTCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCTCCGCCAGGGCCG2720500.11823272014236046No Hit
AGGGTGATAGATTGGTCCAATTGGGTGTGAGGAGTTCAGTTATATGTTTG2715940.11803454289411594No Hit
GTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAAGA2661390.11566380410206825No Hit
CACCTTGTTACGACTTTTACTTCCTCTAGATAGTCAAGTTCGACCGTCTT2558690.11120047002428092No Hit
TGTTCCGTTGGTCAAGTTATTGGATCAATTGAGTATAGTAGTTCGCTTTG2457200.10678972245315498No Hit
GGTGAAGTCTTAGCATGTACTGCTCGGAGGTTGGGTTCTGCTCCGAGGTC2421420.10523472641320142No Hit
TACGGGCGGTGTGTACAAAGGGCAGGGACTTAATCAACGCAAGCTTATGA2376430.1032794644837014No Hit
GCTCTGTGACACTCTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACC2353290.10227380186870627No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)