FastQCFastQC Report
Fri 1 Jul 2022
EGAF00004724430

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004724430
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52329082
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTTGATTAATGAAAACATTCTTGGCAAATGCTTTCGCTCTGGTCCGT1691770.32329441590433405No Hit
GTCGGAACTACGACGGTATCTGATCGTCTTCGAACCTCCGACTTTCGTTC1250040.23888055211822748No Hit
GGTCCGTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAATACGA1081290.20663270951323015No Hit
GCATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGAACCTC817900.15629932128371754No Hit
GAAAACATTCTTGGCAAATGCTTTCGCTCTGGTCCGTCTTGCGCCGGTCC794780.1518811279739247No Hit
GAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAG778330.14873756050220793No Hit
CTTCGAACCTCCGACTTTCGTTCTTGATTAATGAAAACATTCTTGGCAAA752870.1438721971082925No Hit
CGAACCTCCGACTTTCGTTCTTGATTAATGAAAACATTCTTGGCAAATGC742660.14192108319423605No Hit
GCCAGGCCATCACTAAAGGCACCGAGCACTTTCTTGCCATGAGCCTTCAC735710.14059294982472653No Hit
GTCTTCGAACCTCCGACTTTCGTTCTTGATTAATGAAAACATTCTTGGCA732540.13998716812956893No Hit
GATTAATGAAAACATTCTTGGCAAATGCTTTCGCTCTGGTCCGTCTTGCG731320.1397540281711802No Hit
GGCATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGAACCT703140.13436887732905387No Hit
GATCGTCTTCGAACCTCCGACTTTCGTTCTTGATTAATGAAAACATTCTT689350.1317336314059551No Hit
AATGAAAACATTCTTGGCAAATGCTTTCGCTCTGGTCCGTCTTGCGCCGG679650.12987997763843823No Hit
CAAGAATTTCACCTCTAGCGGCGCAATACGAATGCCCCCGGCCGTCCCTC669780.12799383715540816No Hit
GTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCATTTGCCA644070.12308069917985567No Hit
AAACATTCTTGGCAAATGCTTTCGCTCTGGTCCGTCTTGCGCCGGTCCAA642410.12276347595778576No Hit
GTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGAACCTCCGACT628970.12019511444897887No Hit
CTTTCGTTCTTGATTAATGAAAACATTCTTGGCAAATGCTTTCGCTCTGG626740.11976896518077654No Hit
ATGAAAACATTCTTGGCAAATGCTTTCGCTCTGGTCCGTCTTGCGCCGGT622000.11886315911293838No Hit
GGAACTACGACGGTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTG619990.11847905147657666No Hit
GCTCTGGTCCGTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAA613470.11723309038748281No Hit
CTCCGACTTTCGTTCTTGATTAATGAAAACATTCTTGGCAAATGCTTTCG584080.1116167105702332No Hit
GCTCTTTTAGCTGTTCTTAGGTAGCTCGTCTGGTTTCGGGGGTCTTAGCT575210.10992166841375128No Hit
AATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAA573990.10968852845536253No Hit
GGTCGGAACTACGACGGTATCTGATCGTCTTCGAACCTCCGACTTTCGTT573190.10953564979412403No Hit
GTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAG567230.10839670376789716No Hit
CTTGATTAATGAAAACATTCTTGGCAAATGCTTTCGCTCTGGTCCGTCTT566440.10824573608992415No Hit
GTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAATACGAATGCC566430.10824382510665866No Hit
AAGAATTTCACCTCTAGCGGCGCAATACGAATGCCCCCGGCCGTCCCTCT561000.1072061611935023No Hit
GGCAAATGCTTTCGCTCTGGTCCGTCTTGCGCCGGTCCAAGAATTTCACC559970.10700932991715773No Hit
GGCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAA555030.10606530418400995No Hit
GTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGCCGGGGGCATT554900.10604046140155869No Hit
ATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGATTAATGAAAACAT544770.10410463535362612No Hit
GTCCGTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAATACGAA544070.10397086652504242No Hit
GTTTCGGGGGTCTTAGCTTTGGTTCTCCTTGCAAAGTTATTTCTAGTTAA542840.10373581558338822No Hit
GGTAGCTCGTCTGGTTTCGGGGGTCTTAGCTTTGGTTCTCCTTGCAAAGT542810.10373008263359178No Hit
CTTTCGCTCTGGTCCGTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGG533300.10191273754811903No Hit
GGTTTCGGGGGTCTTAGCTTTGGTTCTCCTTGCAAAGTTATTTCTAGTTA529770.10123816045540412No Hit
GCTGTTCTTAGGTAGCTCGTCTGGTTTCGGGGGTCTTAGCTTTGGTTCTC525440.1004107047014507No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)