EGAF00004724445 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004724445
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	47973708
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ACACGACGCTCTTCCGATCTACACGACGCTCTTCCGATCTACACGACGCT	677436	1.4120984769407443	Illumina Single End PCR Primer 1 (95% over 23bp)
ATGAGGGTAATAATGACTTGTTGGTTGATTGTAGATATTGGGCTGTTAAT	408562	0.8516373176740893	No Hit
ATGAGGGTTCTGTGGGCAAATTTAAAGTTGAACTAAGATTCTATCTTGGA	260911	0.5438624840089492	No Hit
ATGAGGGATATGAAGCACCGCCAGGTCCTTTGAGTTTTAAGCTGTGGCTC	122456	0.25525648340545204	No Hit
ATGAGGGGGTGATCTAAAACACTCTTTACGCCGGCTTCTATTGACTTGGG	122303	0.2549375587144525	No Hit
CGGACGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGG	93941	0.19581767579858536	No Hit
ACACGACGCTCTTCCGATCTACACGACGCTCTTCCGATCTACACGACGCC	92845	0.19353309108397457	Illumina Single End PCR Primer 1 (95% over 23bp)
ATGAGGGTGACGGGCGGTGTGTACGCGCTTCAGGGCCCTGTTCAACTAAG	88909	0.18532859707237972	No Hit
ACACCCTCATGTCTCTTCACCGTGCCAGACTAGAGTCAAGCTCAACAGGG	56601	0.11798337539387199	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
ACGATAC	106880	68.5769	1
TATTACC	195620	68.48861	1
CGATGTA	161625	68.47026	1
CGGACGT	227105	68.196495	1
TGTAGTG	160655	67.88961	4
ATGTAGT	162710	67.60863	3
GATGTAG	162525	67.59658	2
TACCTCA	198380	67.48749	4
TCACCGG	117395	67.374275	8
TGCAACA	169710	67.1186	6
GCCATCG	268790	66.99614	9
AGGGAGC	264185	66.9744	4
ACACCCG	90665	66.77155	10
AACACGT	202040	66.74338	10
ATTACCT	199040	66.733536	2
CGTTGCA	89790	66.725945	3
CAACACG	203250	66.600876	9
ATGGGAC	544330	66.50439	35
CCTCAAC	201300	66.46258	6
CCATCGC	270865	66.444145	10