FastQCFastQC Report
Fri 1 Jul 2022
EGAF00004724447

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004724447
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences123423367
Sequences flagged as poor quality0
Sequence length76
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCTATATAAATGCGTAGGGGTTTTAGTTAAATGTCCTTTGAAGTATAC4697920.38063456816892705No Hit
TGTTCCGTTGGTCAAGTTATTGGATCAATTGAGTATAGTAGTTCGCTTTG2826250.22898824336885898No Hit
ACGGGCTGTTAATTGTCAGTTCAGTGTTTTAATCTGACGCAGGCTTATGC2797340.22664589923235526No Hit
CCACCTACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAG2620910.21235119926682927No Hit
CAGTCCTTTGAAGTATACTTGAGGAGGGTGACGGGCGGTGTGTACGCGCT2476690.2006662158228109No Hit
CGTTGGGTTGACAGTGAGGGTAATAATGACTTGTTGGTTGATTGTAGATA2328040.18862230520740858No Hit
GGTGAAGTCTTAGCATGTACTGCTCGGAGGTTGGGTTCTGCTCCGAGGTC1993840.16154477458065133No Hit
GCCTCTATATAAATGCGTAGGGGTTTTAGTTAAATGTCCTTTGAAGTATA1962190.15898043034265952No Hit
CGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGG1799040.14576170167193706No Hit
GTGCGGTGTGTACAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCC1753470.14206953210083792No Hit
ACGCCGAGTTCCTTTTACTTTTTTTAACCTTTCCTTATGAGCATGCCTGT1568630.12709343766322628No Hit
CAGATCACGTAGGACTTTAATCGTTGAACAAACGAACCTTTAATAGCGGC1568210.12705940845058944No Hit
GCACTCTACTCTCAGTTTACTGCTAAATCCACCTTCGACCCTTAAGTTTC1465890.11876924407677193No Hit
CCACCAACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAG1436830.11641474665004074No Hit
CCCTCCTCTATATAAATGCGTAGGGGTTTTAGTTAAATGTCCTTTGAAGT1407270.11401973825588471No Hit
GGCGACTTTTACTTCCTCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGC1349030.10930102077024036No Hit
TGACTTTTACTTCCTCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCTC1343120.10882218113527886No Hit
TACGGGCGGTGTGTACAAAGGGCAGGGACTTAATCAACGCAAGCTTATGA1318830.10685415833778056No Hit
GGGCATCACAGACCTGTTATTGCTCAATCTCGGGTGGCTGAACGCCACTT1300460.10536578539459227No Hit
GCCTCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCTCCGCCAGGGCCG1288880.10442755138903316No Hit
CAGTCCTTTCGTACAGGGAGGAATTTGAAGTAGATAGAAACCGACCTGGA1269970.10289542660102603No Hit
CACCTTGTTACGACTTTTACTTCCTCTAGATAGTCAAGTTCGACCGTCTT1256330.10179028740967666No Hit
ATGAGGGTAATAATGACTTGTTGGTTGATTGTAGATATTGGGCTGTTAAT1249300.1012207032076835No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)