FastQCFastQC Report
Tue 13 Sep 2022
EGAF00004724461

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004724461
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32333776
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCTTTAAGTTTCAGCTTTGCAACCATA1168740.3614610307190846No Hit
TGCCCTCCAATGGATCCTCGTTAAAGGA1132060.350116856132114No Hit
CCTCTATATAAATGCGTAGGGGTTTTAG837220.2589304756734877No Hit
GTCTCGTTCGTTATCGGAATTAACCAGA824310.25493774683167225No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC811610.251009965554286No Hit
CAGTCCTTTGAAGTATACTTGAGGAGGG574060.17754189922018387No Hit
TAGTTGGTTGATTGTAGATATTGGGCTG501000.15494633228114155No Hit
CCACCTACTAAGAACGGCCATGCACCAC483190.14943816026931095No Hit
AGGTCCGTCTTGCGCCGGTCCAAGAATT469180.14510522989953292No Hit
TGCCCTACAATGGATCCTCGTTAAAGGA459660.1421609403120749No Hit
AGGCCGTCCCTCTTAATCATGGCCTCAG448040.13856717508032468No Hit
CATGCCTGTGTTGGGTTGACAGTGAGGG438910.1357435023982352No Hit
GCTGCGGATATGGGTACGGCCCGGCGCG393900.12182307442223884No Hit
CCCTCCTAATCATGGCCTCAGTTCCGAA388900.1202767038405907No Hit
ACGGGCTGTTAATTGTCAGTTCAGTGTT385320.11916950250413066No Hit
GTGCGGTGTGTACAAAGGGCAGGGACTT373110.11539326554374596No Hit
ATTGGTGGCTGCTTTTAGGCCTACTATG368090.11384070947977126No Hit
AGGGTGATAGATTGGTCCAATTGGGTGT368050.11382833851511806No Hit
GCTGCTTTTAGGCCTACTATGGGTGTTA352630.10905933164131526No Hit
ACGCCGAGTTCCTTTTACTTTTTTTAAC346770.10724698531962366No Hit
CCTAGCTGCGGTATCCAGGCGGCTCGGG343380.10619854606526624No Hit
TTGGCAAATGCTTTCGCTCTGGTCCGTC338380.10465217548361813No Hit
TACGGGCGGTGTGTACAAAGGGCAGGGA336520.10407692562724503No Hit

[OK]Adapter Content

Adapter graph