FastQCFastQC Report
Sat 10 Sep 2022
EGAF00004724481

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004724481
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2274683
Sequences flagged as poor quality0
Sequence length151
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGATCACGTAGGACTTTAATCGTTGAACAAACGAACCTTTAATAGCGGC57480.25269455128472845No Hit
TGTTCCGTTGGTCAAGTTATTGGATCAATTGAGTATAGTAGTTCGCTTTG54840.24108853849085782No Hit
CCTCTATATAAATGCGTAGGGGTTTTAGTTAAATGTCCTTTGAAGTATAC46160.20292937521404084No Hit
GGTGAAGTCTTAGCATGTACTGCTCGGAGGTTGGGTTCTGCTCCGAGGTC45460.19985202333687815No Hit
GGATTACTCCGGTCTGAACTCAGATCACGTAGGACTTTAATCGTTGAACA37700.16573737967004634No Hit
TGCCCATTGCTCTCCCACTCCACGGCGATGTCGCTGGGATAGAAGCCTTT32590.14327271096675886No Hit
CGGAGTCTCAGTGATAAATACTTCGACAGGACCACTTGAGCTTGGATAGG26550.11671956048381246No Hit
TGACTTTTACTTCCTCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCTC24840.10920202946960082No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)