FastQCFastQC Report
Sun 11 Sep 2022
EGAF00004724489

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004724489
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11857708
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACCGCGGGAACCCCGCATCTTCACGGG1803341.520816670472911No Hit
TGTGGTAGTCAGAATAAAGGAATTGGTT1507391.2712321807890699No Hit
CCCATACCAATCCAACGTCCAATGAGTT1490261.2567858813861834No Hit
TCACGAAAGAGGACGGGCCGGACCGTTT1253391.0570255229762784No Hit
CATCAGATCGAATGGGTCAATGCTGGTT1098180.9261317617198872No Hit
CGGTTAATCAACACACTTGAGCTCGTTT1004630.8472379316474989No Hit
CGATGGCGTAAACCTCGTAAGTCTTGTT810350.6833951384196676No Hit
GACGGCTCTATGAAATCTTATCTCGAGG785290.6622612059598701No Hit
GACCAATAGAGTAATCACCTCCAAGGTT730620.6161561745322114No Hit
GAACTAAGGTTCCTAAAAGAGCTACTTT628380.5299337780960706No Hit
CCCTCCTAGCGCTCCATCCGTAATGCTT599650.5057048124308677No Hit
TTCTCCTAGAGTGAGACTTGATTGACTT535910.4519507479860358No Hit
CGTGTCTCACAACTGTCTCGTTATCTTT515240.43451904870654595No Hit
CTGAAGTAGTAGATGTCCGTCTTAGGTT470640.39690638359453617No Hit
TTAGGCAGTAGCCTCGGCGAGAACGGTT467020.3938535170540546No Hit
GGTGAAGTCTTAGCATGTACTGCTCGGA433130.365272951568718No Hit
CGTCCATACATAGCTACCCTGCTGCGCT415970.35080135216687747No Hit
CCCTCCTAGCGCTCCAACTTCTAAGGTT346660.29234992124953657No Hit
GATGAAATCCTCAATTTTCGCTATCATT340190.28689355480839973No Hit
CAGATCACGTAGGACTTTAATCGTTGAA332810.2806697550656501No Hit
GGGACCTAGCGCTTATGACATAGTTGTT275800.23259132371955862No Hit
GAATAAGAGAAACGAGTATTAAAGCATT266780.22498445736730907No Hit
CAGATCAGTCATACTGTTGTCCTGTGTT251770.21232602455719096No Hit
GATGAAACAAGTCTGTTTCTTATATTTT231060.1948605919457622No Hit
AACCATGGGAACCCCGCATCTTCACGGG194000.16360665990425804No Hit
AAGGAGCGTTGTGGAGCAATCTCGGTTT184800.15584799355828294No Hit
GGATTACTCCGGTCTGAACTCAGATCAC179480.15136146041039297No Hit
GGGCATCATTTCAGAGCTTGCACCCCTC167540.14129206082659482No Hit
GACTAACCATCTATGGCCTTACATATTT166250.14020416087156135No Hit
CTCTAATGTGATGTCTTATACGCACGTT154020.1298901946312053No Hit
GATCGCGGGAACCCCGCATCTTCACGGG154000.12987332796523576No Hit
CTCGTACTAGGGTCAACTCCTCTCAAAT152580.1286757946814005No Hit
GACGTCGTCCTGCTTATCTGGGAGGTTT144340.12172672830196189No Hit
CAACCAAAGTACATGAGTGCCACATATT136320.11496319524818793No Hit
CCACTACCCATTACCAGATCGCTTCACA127290.10734789556295365No Hit
CCTCTATATAAATGCGTAGGGGTTTTAG125550.10588049562360619No Hit
TGCACCTCTCCACTTAACCTTCAGGCAC124780.10523112898378001No Hit
TGAGGGAGGCTTCCCGCTTAGATGCTTT120800.1018746624558473No Hit
TGTTCCGTTGGTCAAGTTATTGGATCAA120490.10161322913331985No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)