FastQCFastQC Report
Sun 11 Sep 2022
EGAF00004724505

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004724505
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14595252
Sequences flagged as poor quality0
Sequence length28
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCCTAATCGGTTCGGTCTTTGCTTATT4294042.9420800682304082No Hit
AACCGCGGGAACCCCGCATCTTCACGGG4128962.8289747926243414No Hit
ACACCAAGTCTACCTCGGGCTGTATGTT3016152.0665282106811174No Hit
CACATAGTCCCTGACTACATGATGTCTT2803911.9211110572123042No Hit
GACGGCTCTATGAAATCTTATCTCGAGG2458191.684239504737568No Hit
GATTCAGGTGAGGGAGAATAGTCAATTT2410001.6512219179223488No Hit
GATTCAGGTGAGGGAGCCCTTGGATCTT1710741.1721209061686637No Hit
CAGATCACAACTGCTACCAAACACATTT815370.5586542801727575No Hit
CGTCCATACATAGCTACCCTGCTGCGCT672420.46071146973001903No Hit
CCACCTAAGGAGTTTATTCAACAAGCTT568650.3896130056541675No Hit
CTCGTACTAGGGTCAACTCCTCTCAAAT535350.36679736670528196No Hit
TGTTCCGTTGGTCAAGTTATTGGATCAA479790.32873019253110536No Hit
AACCATGGGAACCCCGCATCTTCACGGG472740.32389985455544035No Hit
GGGCATCATTTCAGAGCTTGCACCCCTC405880.278090436533744No Hit
TGACGGCTCTATGAAATCTTATCTCGAG400850.27464411029011354No Hit
TGAGGGAGGCTTCCCGCTTAGATGCTTT364820.249958000040013No Hit
TGCACCTCTCCACTTAACCTTCAGGCAC363430.2490056355313358No Hit
ATGCGATCACATCTTTCACAAGATCTTT297220.2036415678194525No Hit
GGTATTGAGATCTGAATATTCCTGTTTT272310.18657437363876964No Hit
CAGATCACGTAGGACTTTAATCGTTGAA251800.17252185847835996No Hit
GATCGCGGGAACCCCGCATCTTCACGGG251460.17228890600861155No Hit
CCACTACCCATTACCAGATCGCTTCACA245250.16803409766408967No Hit
AAGCCGCGGGAACCCCGCATCTTCACGG241620.1655469874723643No Hit
AAGACCTAGAGGTTATCGCTTGCCCCTT235960.16166901400537656No Hit
CATGCCTGCATTCGCACTTCCGATACCT233770.16016852603846785No Hit
GTCTCGTGACGTTCTGAACCCAGCTCAC228090.1562768494850243No Hit
ATCGAGTCATGGTCTCTGACGGCTCTAT227580.15592742078040173No Hit
GTCTTCGTCATGGTCTCTGACGGCTCTA216180.14811666150060307No Hit
ACGGGCTTCATTTCAGAGCTTGCACCCC214720.1471163361893306No Hit
ATCTACTAGCCACTATCCAGCATCCATT213170.14605434698900713No Hit
GCACTCTAACAGACGGTTTCCAACCGTC209090.14325891735202653No Hit
GACTGCGGGAACCCCGCATCTTCACGGG206620.14156658617473683No Hit
TCCACACCCATTACCAGATCGCTTCACA198850.13624293708666352No Hit
CTCGAGTTGCAGAGAACAATCCGAACTG198620.13608535159242197No Hit
ATCATGGTCATGGTCTCTGACGGCTCTA194310.13313233646119985No Hit
GACGGCTTTTGGAGATTAGCTCACCCTT192570.13194016793954638No Hit
CCTCCACGACCCATTACCAGATCGCTTC192520.1319059102234069No Hit
CCACGACCCATTACCAGATCGCTTCACA191260.13104261577669232No Hit
CTACGTCATGGTCTCTGACGGCTCTATG188760.12932972996971892No Hit
GGTGAAGTCTTAGCATGTACTGCTCGGA185120.12683576823476567No Hit
GCTGCAGTAAAGGTGCACGGGGTCTTTC179330.12286872470581528No Hit
ATCACCGTCATGGTCTCTGACGGCTCTA179120.12272484229802953No Hit
ACACCCTTGCGAGATTGCTGCCCACTGT178910.12258095989024376No Hit
CTCTACGACCCATTACCAGATCGCTTCA171530.11752452098805831No Hit
CCACCTAAGGAGTTTAACTTCAGCTGTT164160.11247493362910076No Hit
CTCGAGGGAGGCTTCCCGCTTAGATGCT163840.11225568424580816No Hit
TGCTACCTTAGGACCGTTATAGTTACGG163570.11207069257865503No Hit
ATGCGATCACATCTTTTCATAGACGGTT154840.10608929534070394No Hit
AGCTCTCGAGTTGCAGAGAACAATCCGA154390.10578097589544874No Hit
AGAGCTTTCAGCTTAGCGCAAGGAGGTT151230.10361588823543438No Hit
CACCGCGGGAACCCCGCATCTTCACGGG150680.10323905335790022No Hit
GGACGTCATGGTCTCTGACGGCTCTATG150130.10286221848036607No Hit
TGCTACCTTAGGACCGTTATTGTTACGG146690.10050528760997068No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)