FastQCFastQC Report
Sat 10 Sep 2022
EGAF00004724507

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004724507
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7783120
Sequences flagged as poor quality0
Sequence length28
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGGTGACACCGAAAGCTGCTTCCATTT774670.995320642621468No Hit
TGTTCCGTTGGTCAAGTTATTGGATCAA683040.8775915057200712No Hit
AACTTTCTCAAGGTAAGCTTATAGTCTT602810.7745094512226459No Hit
GTTTCTATCTCTTATGCGATATATTCTT521650.6702325031606863No Hit
AGTAGTCAGTAAGTACAGGGGGGTGCTT484970.6231048731100124No Hit
GCGACCAGTGAGGGTTGCATACGTGTTT455700.5854978466219203No Hit
GTTTCTATCTCTTATGCCCTGGCGCCTT374710.4814393199642303No Hit
GAAACTCAGTGTTGAAGTTCGAGGGCTT226970.2916182713359167No Hit
GATGCTAAGCCCAGCTCTATTGAGTTTT216480.2781403858606831No Hit
CCAGCGAAGGTTCCTATATCCTTTCCTT202040.25958741481565234No Hit
CCTCTATATAAATGCGTAGGGGTTTTAG183160.2353297906238115No Hit
GTAGGCCTTATTTCTCTTGTCCTTTCGT182420.2343790150993432No Hit
GGATTACTCCGGTCTGAACTCAGATCAC177850.22850733381985633No Hit
AAACGGGGGAAGGCGCTTTGTGAAGTAG100070.1285731172074952No Hit
GGATTACCACACATGTGAGTCGGTACTT99920.12838039243902188No Hit
ATGTGTGGGTATAATACTAAGTTGAGAT93690.12037589038843034No Hit
GGTGAAGTCTTAGCATGTACTGCTCGGA93340.11992619926199262No Hit
GACCTGGATTACTCCGGTCTGAACTCAG85360.10967324157921245No Hit
CAGATCACGTAGGACTTTAATCGTTGAA77960.1001654863345291No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)