FastQCFastQC Report
Sat 10 Sep 2022
EGAF00004724509

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004724509
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7724243
Sequences flagged as poor quality0
Sequence length28
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGGTGACACCGAAAGCTGCTTCCATTT768920.9954632447477377No Hit
TGTTCCGTTGGTCAAGTTATTGGATCAA678150.8779501110982656No Hit
AACTTTCTCAAGGTAAGCTTATAGTCTT601320.7784840533887916No Hit
GTTTCTATCTCTTATGCGATATATTCTT520000.6732051283213125No Hit
AGTAGTCAGTAAGTACAGGGGGGTGCTT473770.6133546031630543No Hit
GCGACCAGTGAGGGTTGCATACGTGTTT459410.5947637846194118No Hit
GTTTCTATCTCTTATGCCCTGGCGCCTT372320.48201487187805975No Hit
GAAACTCAGTGTTGAAGTTCGAGGGCTT225130.29145898180572516No Hit
GATGCTAAGCCCAGCTCTATTGAGTTTT213230.2760529413691413No Hit
CCAGCGAAGGTTCCTATATCCTTTCCTT199050.2576951553699178No Hit
CCTCTATATAAATGCGTAGGGGTTTTAG182330.23604902124389407No Hit
GTAGGCCTTATTTCTCTTGTCCTTTCGT181360.2347932347545255No Hit
GGATTACTCCGGTCTGAACTCAGATCAC176140.2280352909663769No Hit
GGATTACCACACATGTGAGTCGGTACTT101370.13123616126525278No Hit
AAACGGGGGAAGGCGCTTTGTGAAGTAG98690.12776656560390448No Hit
GGTGAAGTCTTAGCATGTACTGCTCGGA95120.12314475347292933No Hit
ATGTGTGGGTATAATACTAAGTTGAGAT90820.11757786491181077No Hit
GACCTGGATTACTCCGGTCTGAACTCAG85550.11075518986132364No Hit
CAGATCACGTAGGACTTTAATCGTTGAA78020.10100666175313232No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)