FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004724537

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004724537
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30400253
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG46050.010.46824356-57
CGTATGC48350.010.21584354-55
TCGTATG49050.09.39225954-55
CTCGTAT57750.08.18292252-53
TGCGTAG270700.06.631803594-95
GCGTAGA255600.06.61480894-95
CTGCGTA298600.06.29049494-95
ACTGCGT335500.05.789737794-95
ATGCCGT81150.05.735453658-59
TCTCGTA77400.05.675944352-53
ATCTCGT91400.05.456009450-51
CCGTCTT102950.05.282124560-61
CACTGCG421050.05.27886194-95
GTATGCC96250.05.082458556-57
CGTAGAC95850.05.07878594-95
CGTAGAT98200.05.005609594-95
Produced by FastQC (version 0.11.5)