FastQCFastQC Report
Tue 28 Jun 2022
EGAF00004724666

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004724666
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences381641914
Sequences flagged as poor quality0
Sequence length151
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG33170530.869153224087436No Hit
AAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20083620.526242513289565No Hit
TTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG17818480.4668900177457972No Hit
TAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12301920.32234195324782905No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAACAACCAATCTCGTAT10571410.2769981391509319TruSeq Adapter, Index 1 (97% over 37bp)
AATGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6711730.17586459332137191No Hit
ATTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6240600.16351977524145841No Hit
CTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG4271670.11192874375952322No Hit
ATAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG3826430.10026231028701948No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)