FastQCFastQC Report
Wed 8 May 2024
EGAF00004824121

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004824121
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14772635
Total Bases369.3 Mbp
Sequences flagged as poor quality0
Sequence length25
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAA424980.2876805661278438No Hit
CTAGAGCTGTCTCTTATACACATCT282970.1915501195284389No Hit
CCTGTCTCTTATACACATCTCCGAG271250.18361653151248913No Hit
GCTGTCTCTTATACACATCTCCGAG170280.1152671815150107No Hit
CTAGCTGTCTCTTATACACATCTCC163210.11048130546784646No Hit
TCTGTCTCTTATACACATCTCCGAG153460.10388126424297357No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)