FastQCFastQC Report
Thu 9 May 2024
EGAF00004824123

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004824123
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14724497
Total Bases368.1 Mbp
Sequences flagged as poor quality0
Sequence length25
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAA437650.29722577280568563No Hit
CTAGAGCTGTCTCTTATACACATCT282450.1918231909721602No Hit
CCTGTCTCTTATACACATCTCCGAG273260.18558189118446627No Hit
GCTGTCTCTTATACACATCTCCGAG170690.11592246580647203No Hit
CTAGCTGTCTCTTATACACATCTCC165000.11205815723280735No Hit
TCTGTCTCTTATACACATCTCCGAG154300.1047913555213465No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)