FastQCFastQC Report
Fri 10 May 2024
EGAF00004824153

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004824153
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10863089
Total Bases271.5 Mbp
Sequences flagged as poor quality0
Sequence length25
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTCTCTTATACACATCTCCGAG140450.1292910331490426No Hit
ACTGTCTCTTATACACATCTCCGAG132660.12211996053792802No Hit
TCTGTCTCTTATACACATCTCCGAG131510.12106132979302665No Hit
AAAAAAAAAAAAAAAAAAAAAAAAA116680.10740959592616796No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)