FastQCFastQC Report
Sun 19 May 2024
EGAF00004827410

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827410
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences345218281
Total Bases22 Gbp
Sequences flagged as poor quality0
Sequence length64
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTCAGGCTCCTGGGCAACGTGCTGGTCTGTGTGCTGGCCCATCACTTTG4171660.12084122509143713No Hit
CTTCAAGCTCCTAAGCCACTGCCTGCTGGTGACCCTGGCCGCCCACCTCC4036420.11692370370154297No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG3991870.11563321584351438No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGAGGCATTGAGGCAGCCAGC3553010.10292067933679329Clontech SMARTer II A Oligonucleotide (100% over 25bp)
AAAGAATTCACCCCACCAGTGCAGGCTGCCTATCAGAAAGTGGTGGCTGG3543430.10264317375475258No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)