FastQCFastQC Report
Fri 10 May 2024
EGAF00004827432

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827432
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences557210361
Total Bases56.4 Gbp
Sequences flagged as poor quality0
Sequence length35-131
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA53041390.9519096146168036No Hit
GTTGTCAAGATGCTACCGTTCAGAGCGGCTCGTGCTGCGTCGTCTCAAGT21711220.3896413548562856No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA10510580.1886285815134008No Hit
GTTGTCAAGATGCTACCGTTCAGAGTGGATGGGATAAGTGCGTGATGGAC10176700.18263658955903728No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA6051590.10860512337099201No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5627110.10098717457265659No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)