FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004827448

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827448
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14303673
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA377330.2637993751674832No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC278020.19436965596179387No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN239760.1676212816106744No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG224470.15693171956601637No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC215810.15087733059893077No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC187250.13091043118784942No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG176930.12369550114855114No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT143800.10053361818324566No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)