FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004827450

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827450
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14282494
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA374850.2624541624172921No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC278840.19523200919951378No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN246540.1726169113041462No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG224840.1574234864023048No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC219370.15359362307451344No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC188870.13223880927238618No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG178790.12518121835024051No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT143730.10063368484523781No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)