FastQCFastQC Report
Wed 8 May 2024
EGAF00004827490

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827490
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13664756
Total Bases1.3 Gbp
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA536660.39273295476333425No Hit
GTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGT288510.21113439566721862No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA287110.21010986218853817No Hit
GACAAATCAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACACAAGCCC285410.208865785821569No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC268130.19622011545614135No Hit
GACAAATCAAGAAACAAACTGCACTTGTTGAGCTCGTGAAACACAAGCCC253580.1855722853741406No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT214390.15689266606736335No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG193940.14192715918235202No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN192330.14074894568186946No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT187340.13709721564000119No Hit
TGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAG176910.1294644412238316No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG170500.12477354151073022No Hit
GGAGAGACAAATCAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACACA169940.12436372811925804No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA163740.11982650842795876No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC161210.11797503007005761No Hit
CGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAGAAGAAAC155320.11366467136332328No Hit
GGAGAGACAAATCAAGAAACAAACTGCACTTGTTGAGCTCGTGAAACACA151330.1107447509490839No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT150090.10983730701082406No Hit
CATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTAT142540.10431214432222573No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT139540.10211671543933899No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)