EGAF00004827493 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004827493
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	13682556
Sequences flagged as poor quality	0
Sequence length	100
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTA	40792	0.2981314309987111	No Hit
CTCTTAACGGTTTCACGCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCA	38546	0.2817163693684133	No Hit
CTCCTCGGCAAAGCAGGTCTCCTTATCGTCAGCCTTGCAGCACTTCTCTA	31782	0.2322811615022807	No Hit
GGCTGAGATGCTTTTAAATGTGATGTTATAAGCCTAAGGCAGCTTGACTT	22670	0.16568541725683417	No Hit
CTCTTATTCTCATGGTAGGCTGAGATGCTTTTAAATGTGATGTTATAAGC	19908	0.14549913042563098	No Hit
CTCGGCAAAGCAGGTCTCCTTATCGTCAGCCTTGCAGCACTTCTCTACAA	18063	0.1320148077596028	No Hit
CTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTT	17463	0.12762966217715463	No Hit
CCCGTATCGAAGGCCTTTTTGGACAGGTGGTGTGTGGTGGCCTTGGTATG	16181	0.11826006778265699	No Hit
CTTAACGGTTTCACGCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAAC	16167	0.11815774771906654	No Hit
CTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATC	15317	0.1119454581439316	No Hit
CCTCGGCAAAGCAGGTCTCCTTATCGTCAGCCTTGCAGCACTTCTCTACA	13787	0.10076333690868869	No Hit
CTCATGGTAGGCTGAGATGCTTTTAAATGTGATGTTATAAGCCTAAGGCA	13746	0.10046368529388808	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CCCGTAT	5120	37.41329	1
GTATCGA	4945	37.068565	4
TATCGAA	5520	33.547844	5
GTCGGGA	3410	28.846518	1
GAACGGG	3365	27.79414	9
TCGCGTA	2505	26.830935	2
CGTATCG	9345	26.354784	3
CCGTATC	9405	25.83683	2
AGGAACG	3875	24.136074	7
CGGTTCG	955	24.115717	3
CGCGTAA	2835	23.541967	3
CCGGTAA	1110	22.472654	1
CGGTAAT	1045	21.588997	2
ATCGAAG	9555	21.544746	6
GCGTAAC	3195	21.330675	4
CCCGTCG	1615	20.982704	1
TGTCGAG	1175	20.000443	5
GGAACGG	4710	19.857174	8
TCGAAGG	10955	19.134089	7
AGTTTAC	27390	18.840912	94